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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2265643_2268470_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2265643 - 2268470
Intron Length:
2828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CAGTTCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCTAT
U12 Branch Point Sequence:
CAGTTCTTATTA
Flanking Amino Acid:
GDVFTRLSKEVMFTEEDVKF
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
57.2
0.18
1.2
56.5
40.3
Major PPT
67.8
0.4
0.9
67.1
38.8
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
54.4
0.13
1.6
59.4
41.2

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004