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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2269980_2270642_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2269980 - 2270642
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
MKVLKKASLKVRDRVRTKME
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.1
0.83
0.8
82.4
34
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004