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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2277873_2277992_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2277873 - 2277992
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAGTG
5'SS Class:
major
3'SS Sequence:
TTCCCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTGTCTAATG
Flanking Amino Acid:
MWHSHLNGLKMADEP
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.9
38
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.4
0.75
0.7
80.9
24.3
Minor 5ss
36.5
-1.5
3.6
52
44.9
Minor BPS
52.3
-0
2.1
67.5
40.9

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281