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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2277873_2288245_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2277873 - 2288245
Intron Length:
10373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTCCCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTGTCTAATG
Flanking Amino Acid:
TGEMRYSEKQLNGLKMADEP
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.4
0.75
0.7
80.9
24.3
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
52.3
-0
2.1
67.5
40.9

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026638
2249652 - 2289110
39459