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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2312245_2314345_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2312245 - 2314345
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCAGAACT
Flanking Amino Acid:
DQMSSLLDYKNEEVRFIENE
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
68.9
0.67
1.7
89.02
34.7

Associated Gene:

Gene:
HDX
Ensembl Gene ID:
ENSAPLG00000007946
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008270
2310974 - 2345155
34182