About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2320538_2324685_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2320538 - 2324685
Intron Length:
4148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCATGTTTATTT
Flanking Amino Acid:
ELNVDCEIVRTWIGNRRRKY
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.5
0.46
1.1
71.6
38.5
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
49.3
0.03
2
67.81
44

Associated Gene:

Gene:
HDX
Ensembl Gene ID:
ENSAPLG00000007946
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008270
2310974 - 2345155
34182