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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2324833_2334088_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2324833 - 2334088
Intron Length:
9256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTATCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
WITGCSRKRALQDRTQFSDR
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
76.8
37.1
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
HDX
Ensembl Gene ID:
ENSAPLG00000007946
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008270
2310974 - 2345155
34182