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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2334143_2340022_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2334143 - 2340022
Intron Length:
5880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTCCCCTCTACA
Flanking Amino Acid:
RLSQNQNNYQISGNLTVPWI
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
36.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
82.2
0.73
0.7
76.1
26
Minor 5ss
39.7
-1.2
3.1
57.2
46.8
Minor BPS
54.7
0.14
1.9
69.58
42.2

Associated Gene:

Gene:
HDX
Ensembl Gene ID:
ENSAPLG00000007946
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008270
2310974 - 2345155
34182