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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2376418_2436089_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2376418 - 2436089
Intron Length:
59672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
TPKQVVDWMKGLDDCLQQYI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.7
35.9
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
38.1
-1.3
3.2
51.7
45
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007834
2376351 - 2550464
174114