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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2378558_2520105_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2378558 - 2520105
Intron Length:
141548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACTTC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATGATTTATTT
Flanking Amino Acid:
VAFAYVIYTERYASSAIDRQ
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.7
40.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.6
0.67
0.8
72.3
37.7
Minor 5ss
46.7
-0.3
3.2
67.5
43.9
Minor BPS
49.4
0.04
1.8
69.6
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035689
2378475 - 2546424
167950