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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2426846_2436089_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2426846 - 2436089
Intron Length:
9244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
LQLFQTIFLEGLDDCLQQYI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463