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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2436254_2455264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2436254 - 2455264
Intron Length:
19011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTCATTTGATT
Flanking Amino Acid:
LEAVDLLCALNYGLETENLR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83.2
0.75
0.7
81.4
23.7
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
63.4
0.5
1.5
81.38
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414