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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2463101_2467128_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2463101 - 2467128
Intron Length:
4028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
YETENKILHVCKTLSGICDH
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414