About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2489475_2494230_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2489475 - 2494230
Intron Length:
4756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTTCTTCATG
Flanking Amino Acid:
NVRWKPLALQPVIPTSPTSS
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
59.2
0.15
1.8
66.18
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463