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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2494365_2494941_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2494365 - 2494941
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TTACAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
TTTCCCTGCAAT
Flanking Amino Acid:
LSPMSGLYGPRDEIGIMSCD
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
73.6
0.53
0.9
70.7
39.5
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
53.4
0.19
2.1
80.15
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463