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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2495148_2499546_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2495148 - 2499546
Intron Length:
4399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCTTG
5'SS Class:
major
3'SS Sequence:
GAATTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCATCTTGAATT
Flanking Amino Acid:
VRRREKTPTHGDLRPVSMPT
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
62.4
44.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
1
62
48
Minor 5ss
46.2
-0.4
3.2
60.4
45.8
Minor BPS
59.8
0.39
1.5
69.07
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414