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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2499634_2501847_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2499634 - 2501847
Intron Length:
2214

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATCCAACCACTG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTGTTCCATC
Flanking Amino Acid:
EQNMYKRGSRDSENSLLRYL
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
37.6
-0.7
3.1
47.3
33.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
46
-0.3
2.3
65.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463