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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2520155_2523101_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2520155 - 2523101
Intron Length:
2947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAGTT
Flanking Amino Acid:
DRQGSTSMRKSFHYASLRVK
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
61.4
0.44
1.8
84.51
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000035689
2378475 - 2546424
167950
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463