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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2523151_2524594_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2523151 - 2524594
Intron Length:
1444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATCACATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
ACATCTTACACT
Flanking Amino Acid:
LRVKSRKWSKGSSLTGGSRR
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
70.1
0.45
0.9
66.1
39.1
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
48.3
-0
2.1
66.41
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000035689
2378475 - 2546424
167950
ENSAPLT00000026774
2432929 - 2550342
117414