About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2532796_2542764_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2532796 - 2542764
Intron Length:
9969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
FATDCLEEMNRWMNRLGLAA
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.6
0.64
0.9
79.1
34.1
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000035689
2378475 - 2546424
167950
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463