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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2543665_2544763_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2543665 - 2544763
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGTCTTATAGT
Flanking Amino Acid:
LCDSYHRTPSVTSTSPFPET
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.2
32.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
38.6
-1.3
3
54.7
43.6
Minor BPS
47.4
-0.1
2.2
71.11
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000035689
2378475 - 2546424
167950
ENSAPLT00000026774
2432929 - 2550342
117414