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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2545272_2545609_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2545272 - 2545609
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
IRRHNSFCVEENLKETGENS
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.5
0.82
0.7
85.1
29.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000035689
2378475 - 2546424
167950
ENSAPLT00000026774
2432929 - 2550342
117414
ENSAPLT00000025923
2426002 - 2550464
124463