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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2546321_2550331_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2546321 - 2550331
Intron Length:
4011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTTGTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
ACTTCCTCAGAA
Flanking Amino Acid:
LKNYEFFLDIYFR*
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
80
0.67
0.8
75.8
32.8
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
49.9
-0
1.9
63.68
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007509
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025923
2426002 - 2550464
124463
ENSAPLT00000022686
2462103 - 2550464
88362
ENSAPLT00000007834
2376351 - 2550464
174114
ENSAPLT00000026774
2432929 - 2550342
117414