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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2554028_2556939_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2554028 - 2556939
Intron Length:
2912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGAAC
5'SS Class:
major
3'SS Sequence:
TCATCTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTACTTTAACT
Flanking Amino Acid:
VRRPRHRAPPVVKLAAVSSG
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
64.5
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
0.9
72.5
37.4
Minor 5ss
32
-2.1
3.3
43
44.5
Minor BPS
79.7
1.01
1.2
88.46
36.7

Associated Gene:

Gene:
APOOL
Ensembl Gene ID:
ENSAPLG00000024832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019072
2553701 - 2565578
11878