About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2557042_2557635_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2557042 - 2557635
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TCTCTCTGCAGT
Flanking Amino Acid:
SKSQLVKPNQLPIYSSPLLK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
60.3
0.26
1
65.5
28
Major PPT
91.7
0.94
0.6
84.4
30.5
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
45
-0.3
2.1
65.4
45.2

Associated Gene:

Gene:
APOOL
Ensembl Gene ID:
ENSAPLG00000024832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019072
2553701 - 2565578
11878