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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2559317_2560255_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2559317 - 2560255
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTATTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
GIMDSIQFGKDAYVYLKNPP
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
87.7
29
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
APOOL
Ensembl Gene ID:
ENSAPLG00000024832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019072
2553701 - 2565578
11878