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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2562594_2563634_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2562594 - 2563634
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATGT
Flanking Amino Acid:
LWAKKEDVSKLQQESKSVKQ
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.2
0.57
1
68.1
42.3
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
46.5
-0.1
2.2
72.9
44.1

Associated Gene:

Gene:
APOOL
Ensembl Gene ID:
ENSAPLG00000024832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019072
2553701 - 2565578
11878