About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2563789_2565159_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2563789 - 2565159
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATGTTTTTAACA
Flanking Amino Acid:
WSTKDPVPSSGTGKTTKFKP
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.7
25
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.7
0.62
1
73.8
40
Minor 5ss
33.4
-1.9
2.9
39.9
46.1
Minor BPS
75.1
0.78
1.1
76.87
34.2

Associated Gene:

Gene:
APOOL
Ensembl Gene ID:
ENSAPLG00000024832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019072
2553701 - 2565578
11878