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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2573502_2574661_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2573502 - 2574661
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTCTAAAAT
Flanking Amino Acid:
CQCKNEKPFCRCDYYKEGWK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
70.4
42.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
37.1
-1.5
3.6
55.4
48.8
Minor BPS
63.6
0.51
1.8
81.62
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007414
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007691
2571199 - 2583103
11905