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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2574836_2575557_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2574836 - 2575557
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCACCACCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTCTAAATG
Flanking Amino Acid:
CVHYCSSKTEGKQTNSPYHE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.4
32.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
57.7
0.17
0.9
48.2
34.1
Minor 5ss
40.1
-1.1
2.8
44.3
43.6
Minor BPS
56.7
0.07
1.7
60.69
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007414
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007691
2571199 - 2583103
11905