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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2575652_2578291_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2575652 - 2578291
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AATCCCTTACAT
Flanking Amino Acid:
GNLGRQQPPRDAWIGQMPKA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.8
0.49
0.9
65.2
34.3
Minor 5ss
31.7
-2.1
3.4
39
46.2
Minor BPS
58.7
0.35
1.7
74.93
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007414
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007691
2571199 - 2583103
11905