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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2578381_2579444_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2578381 - 2579444
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGCTGT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTTGCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTTTACAACC
Flanking Amino Acid:
FPTSSQPDNYTRVYPQQSRT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
62.3
44.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
78.2
0.63
0.8
76.4
32.2
Minor 5ss
60.7
0.36
2.4
71.8
38.9
Minor BPS
51.7
0.03
1.8
68
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007414
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007691
2571199 - 2583103
11905