About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2588138_2589632_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2588138 - 2589632
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGATT
5'SS Class:
major
3'SS Sequence:
AATTGTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATAATCTTAACA
Flanking Amino Acid:
MPHTMIMQDFVAGMAGTAHI
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
77.6
36.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.1
0.59
0.9
70.3
40.3
Minor 5ss
37.7
-1.4
3.5
53.9
44.6
Minor BPS
72.6
0.7
1.2
75.42
35.2

Associated Gene:

Gene:
ZNF711
Ensembl Gene ID:
ENSAPLG00000007311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007607
2583886 - 2601471
17586