About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2590164_2595945_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
2590164 - 2595945

Intron Length:
5782

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTT|GTAAGTTAA

5'SS Class:
major

3'SS Sequence:
CTTACCTTTACAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTGTTAT

U12 Branch Point Sequence:
ATTCTCTTACCT

Flanking Amino Acid:
STSEDYLMISLDDVGEKLDH

Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.3
0.64
1
75
30.4

Major BPS
81.3
0.78
1.1
71.7
44.6

Major PPT
82.7
0.74
0.8
76
32.4

Minor 5ss
42.1
-0.9
2.8
55
43.6

Minor BPS
67.4
0.62
1.6
83.49
37.3

Associated Gene:

Gene:
ZNF711

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2583886 - 2601471
17586