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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2596105_2596835_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2596105 - 2596835
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCTTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTGTTTAACT
Flanking Amino Acid:
KAEAEDDVEIGGTEIVTESD
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
69.9
43.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.5
0.69
1
82.2
33.3
Minor 5ss
48.3
-0.2
2.8
67
44.3
Minor BPS
67.6
0.63
1.8
81.85
40.1

Associated Gene:

Gene:
ZNF711
Ensembl Gene ID:
ENSAPLG00000007311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007607
2583886 - 2601471
17586