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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2596983_2597572_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2596983 - 2597572
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
TCCTTTAATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTCCTTTAATC
Flanking Amino Acid:
KDSSQEDEDISCAEIADEVY
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
73.5
37.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.4
0.62
0.9
70.1
39.3
Minor 5ss
44.8
-0.6
2.9
59.3
40.4
Minor BPS
73.6
0.72
1.2
75.34
35.5

Associated Gene:

Gene:
ZNF711
Ensembl Gene ID:
ENSAPLG00000007311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007607
2583886 - 2601471
17586