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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2599123_2599686_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2599123 - 2599686
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTGTTTAATT
Flanking Amino Acid:
PRRYEDGQAAGNNLDTRLEN
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
62.1
0.46
1.8
76
41.5

Associated Gene:

Gene:
ZNF711
Ensembl Gene ID:
ENSAPLG00000007311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007607
2583886 - 2601471
17586