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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_260774_261409_F

Intron Information:

Intron Rank:
144776
Intron Class:
major
Intron Phase:
Intron Coordinates:
260774 - 261409
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CCATTGACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
64.3
0.32
1
54.6
40
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
71.3
0.75
1.7
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028032
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043762
260518 - 265109
4592