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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2609067_2610901_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2609067 - 2610901
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATCTTCTAACA
Flanking Amino Acid:
IERSGEIWKHE*
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
58
0.25
1.6
70.47
35.1

Associated Gene:

Gene:
POF1B
Ensembl Gene ID:
ENSAPLG00000007116
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021792
2608226 - 2620528
12303