Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2613253_2613991_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2613253 - 2613991

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAC

U12 Branch Point Sequence:

TTTGTCTTAACA

Flanking Amino Acid:

ELCHLQDDLGKLETDNVLLK

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

78.7

0.71

0.9

69.3

37.7

Major PPT

81.4

0.71

0.9

77.5

35.6

Minor 5ss

41.5

-0.9

2.9

46.3

Minor BPS

0.97

1.2

86.69

32.1

Associated Gene:

Gene:

POF1B

Ensembl Gene ID:

ENSAPLG00000007116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021792

2608226 - 2620528

12303

ENSAPLT00000007401

2610978 - 2620528

9551