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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2617388_2617947_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2617388 - 2617947
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCC
5'SS Class:
major
3'SS Sequence:
GTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTGTTAATC
Flanking Amino Acid:
LLQHVEKIGGRNHDIEFTSQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60
40.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82
0.72
0.9
75.5
38.4
Minor 5ss
36.6
-1.5
3.5
50.9
45.8
Minor BPS
60.3
0.3
2
75.09
35.7

Associated Gene:

Gene:
POF1B
Ensembl Gene ID:
ENSAPLG00000007116
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021792
2608226 - 2620528
12303
ENSAPLT00000007401
2610978 - 2620528
9551