Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2619599_2620326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2619599 - 2620326

Intron Length:

728

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTGTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

AGAAGCTTAAAA

Flanking Amino Acid:

RKYELLNPHQEKQYQFSHQC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

72.5

39.9

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

74.9

0.56

0.9

73.3

37.1

Minor 5ss

41.3

-1

2.8

49.6

Minor BPS

48.8

-0

1.9

58.07

40.5

Associated Gene:

Gene:

POF1B

Ensembl Gene ID:

ENSAPLG00000007116

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021792

2608226 - 2620528

12303

ENSAPLT00000007401

2610978 - 2620528

9551