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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2634674_2639153_R

Intron Information:

Intron Rank:
141430
Intron Class:
major
Intron Phase:
Intron Coordinates:
2634674 - 2639153
Intron Length:
4480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.8
83.6
31.4
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
67.7
0.63
1.5
83.39
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023451
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031694
2631328 - 2639465
8138