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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2659001_2674597_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2659001 - 2674597
Intron Length:
15597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTACCG
5'SS Class:
major
3'SS Sequence:
TCTCCCTGACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACACAATT
Flanking Amino Acid:
EPSSEESSSRDGCVVCSVFI
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
52.8
44.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.6
0.42
1
62.3
38.5
Minor 5ss
31
-2.2
3.2
40.1
45.5
Minor BPS
55.8
0.26
2
82.69
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037782
2658927 - 2731011
72085