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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2679488_2682583_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2679488 - 2682583
Intron Length:
3096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
LFHLNTEAEKETENEELEKP
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.9
0.63
0.9
70.3
40.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044719
2669505 - 2731011
61507