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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2685902_2686992_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2685902 - 2686992
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATACC
5'SS Class:
major
3'SS Sequence:
TTCTGCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
ATATTCAGAATT
Flanking Amino Acid:
SVLKTDSEQQVSILTVPPVD
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.9
34.7
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
76
0.58
1
72.7
37.5
Minor 5ss
42.4
-0.8
2.6
55.1
42.2
Minor BPS
53.3
0.18
1.7
73.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044719
2669505 - 2731011
61507