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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2688024_2692486_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2688024 - 2692486
Intron Length:
4463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AATTTTTCAACA
Flanking Amino Acid:
QCLVVDKESGRCKAIIDHFG
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.3
0.57
1
70.8
39
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
63.3
0.41
1.5
70.87
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000044719
2669505 - 2731011
61507
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085