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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2705415_2706104_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2705415 - 2706104
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAG
5'SS Class:
major
3'SS Sequence:
AAATGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTATATTAAAA
Flanking Amino Acid:
LAFREGKVEQVPCSRADVFN
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.1
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.6
0.51
1
62.5
47.4
Minor 5ss
42.2
-0.9
3.1
55.1
49.2
Minor BPS
55.7
0.18
1.7
69.14
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044947
2677344 - 2731011
53668