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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2705415_2707194_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2705415 - 2707194
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTATATTAAAA
Flanking Amino Acid:
RRFNIDLVSKVPCSRADVFN
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.6
0.51
1
62.5
47.4
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
55.7
0.18
1.7
69.14
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044719
2669505 - 2731011
61507