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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2706222_2707194_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2706222 - 2707194
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
RRFNIDLVSKLLYSRGLLID
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.7
0.56
1
69.1
41.5
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524